Styphoryte Assuming you used this guide:
https://forum.plutonium.pw/topic/13/plutot6-server-set-up-guide
you should have the same base directories required for loading scripts.
In your root server directory you should have:
storage/t6/Create a scripts folder in the t6 folder if you don't already have one. You can create a zm sub folder if you don't want those scripts to load on any other game other than zm. The same applies to mp but with an mp folder/